Research workbench
Identification of a disulfide switch in bssco, a member of the sco family of cytochrome C oxidase assembly proteins
Analyse Identification of a disulfide switch in bssco, a member of the sco family of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1XZO
- Type
- protein
- Length
- 343 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein ypmq
- UniProt
- P54178
- Ligands
- CA, CD
- Pockets
- 5 · best druggability 0.70
Structure
x-ray diffraction · 2 distinct chains · 29% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein ypmq | protein | 172 | 30% helix, 22% strand | P54178 |
| B | Hypothetical protein ypmq | protein | 171 | 29% helix, 22% strand | P54178 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 98 | 0.70 | 0.92 | 17 | empty |
| 2 | 235 | 0.66 | 0.83 | 33 | empty |
| 3 | 151 | 0.61 | 0.84 | 22 | empty |
| 4 | 61 | 0.33 | 0.76 | 15 | empty |
| 5 | 60 | 0.28 | 0.74 | 18 | CA |
Interfaces
1 interface between chains.
- A–B · 568 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 1XZO · Identification of a disulfide switch in BsSco, a member of the Sco family of cytochrome c… · the same entry in another collection · chain B against B, TM-score 1.00
- P54178 · AlphaFold monomer V2.0 prediction for SCO1 protein homolog (P54178) · a predicted model of the same protein · chain B against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P54178
- Elsewhere: RCSB PDB 1XZO · PDBe 1XZO · UniProt P54178
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