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Poliovirus 135S cell entry intermediate

Analyse Poliovirus 135S cell entry intermediate in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
1XYR
Type
protein
Length
724 residues
Chains
7
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Genome polyprotein, coat protein VP1; Genome polyprotein, coat protein VP2; Genome…
UniProt
P03300

Structure

electron microscopy · 7 distinct chains · 0% helix, 0% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
1Genome polyprotein, coat protein VP1protein2320% helix, 0% strandP03300
2Genome polyprotein, coat protein VP2protein2370% helix, 0% strandP03300
3Genome polyprotein, coat protein VP3protein1820% helix, 0% strandP03300
5Genome polyprotein, coat protein VP3protein120% helix, 0% strandP03300
6Genome polyprotein, coat protein VP3protein360% helix, 0% strandP03300
7Genome polyprotein, coat protein VP2protein140% helix, 0% strandP03300
8Genome polyprotein, coat protein VP1protein110% helix, 0% strandP03300

Interfaces

8 interfaces between chains.

  • 1–6 · 231 Ų buried · 0 hydrogen bonds · protein-protein
  • 1–3 · 187 Ų buried · 0 hydrogen bonds · protein-protein
  • 2–3 · 181 Ų buried · 0 hydrogen bonds · protein-protein
  • 1–2 · 178 Ų buried · 0 hydrogen bonds · protein-protein
  • 3–6 · 106 Ų buried · 0 hydrogen bonds · protein-protein

Compared structures

  • 1XYR · Poliovirus 135S cell entry intermediate · the same entry in another collection · chain 1 against 1, TM-score 1.00

Analyse

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