Research workbench
Structural basis for the defects of human lung cancer somatic mutations in the repression activity of KEAP1 on NRF2
Analyse Structural basis for the defects of human lung cancer somatic mutations in the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1X2R
- Type
- protein
- Length
- 299 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Kelch-like ech-associated protein 1; Nuclear factor erythroid 2 related factor 2
- UniProt
- Q9Z2X8, Q60795
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.73
Structure
x-ray diffraction · 2 distinct chains · 1% helix, 52% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Kelch-like ech-associated protein 1 | protein | 290 | 1% helix, 53% strand | Q9Z2X8 |
| B | Nuclear factor erythroid 2 related factor 2 | protein | 9 | 0% helix, 0% strand | Q60795 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 9 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 508 | 0.73 | 0.82 | 58 | empty |
Interfaces
1 interface between chains.
- A–B · 574 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 1X2R · Structural basis for the defects of human lung cancer somatic mutations in the repression… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9Z2X8 · AlphaFold monomer V2.0 prediction for kelch-like ech-associated protein 1 (Q9Z2X8) · a predicted model of the same protein · chain A against A, TM-score 1.00
- Q60795 · AlphaFold monomer V2.0 prediction for nuclear factor erythroid 2-related factor 2 (Q60795) · a predicted model of the same protein · chain B against A, TM-score 0.80
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Z2X8
- Every structure of UniProt Q60795
- Elsewhere: RCSB PDB 1X2R · PDBe 1X2R · UniProt Q9Z2X8 · UniProt Q60795
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