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Structural basis for the defects of human lung cancer somatic mutations in the repression activity of KEAP1 on NRF2

Analyse Structural basis for the defects of human lung cancer somatic mutations in the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
1X2R
Type
protein
Length
299 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Kelch-like ech-associated protein 1; Nuclear factor erythroid 2 related factor 2
UniProt
Q9Z2X8, Q60795
Ligands
SO4
Pockets
1 · best druggability 0.73

Structure

x-ray diffraction · 2 distinct chains · 1% helix, 52% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AKelch-like ech-associated protein 1protein2901% helix, 53% strandQ9Z2X8
BNuclear factor erythroid 2 related factor 2protein90% helix, 0% strandQ60795

Ligands and binding sites

  • SO4 · Sulfate ion · ion · 9 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
15080.730.8258empty

Interfaces

1 interface between chains.

  • A–B · 574 Ų buried · 14 hydrogen bonds · protein-protein

Compared structures

  • 1X2R · Structural basis for the defects of human lung cancer somatic mutations in the repression… · the same entry in another collection · chain A against A, TM-score 1.00
  • Q9Z2X8 · AlphaFold monomer V2.0 prediction for kelch-like ech-associated protein 1 (Q9Z2X8) · a predicted model of the same protein · chain A against A, TM-score 1.00
  • Q60795 · AlphaFold monomer V2.0 prediction for nuclear factor erythroid 2-related factor 2 (Q60795) · a predicted model of the same protein · chain B against A, TM-score 0.80

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