Research workbench
Structure of a cyanobacterial bluf protein, TLL0078
Analyse Structure of a cyanobacterial bluf protein, TLL0078 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1X0P
- Type
- protein
- Length
- 1,399 residues
- Chains
- 10
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein TLL0078
- UniProt
- Q8DMN3
- Ligands
- FAD
- Pockets
- 20 · best druggability 0.66
Structure
x-ray diffraction · 4 distinct chains · 42% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, F | Hypothetical protein TLL0078 | protein | 142 | 42% helix, 28% strand | Q8DMN3 |
| B, C, D, G, J | Hypothetical protein TLL0078 | protein | 139 | 42% helix, 29% strand | Q8DMN3 |
| E, I | Hypothetical protein TLL0078 | protein | 141 | 42% helix, 29% strand | Q8DMN3 |
| H | Hypothetical protein TLL0078 | protein | 138 | 41% helix, 30% strand | Q8DMN3 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · 10 copies · chains A, B, C, D, E, F, G, H, I, J
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
20 pockets found on a 1 Å grid, 15 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 137 | 0.66 | 0.88 | 20 | FAD |
| 2 | 127 | 0.66 | 0.89 | 19 | FAD |
| 3 | 128 | 0.66 | 0.88 | 20 | FAD |
| 4 | 118 | 0.64 | 0.88 | 21 | FAD |
| 5 | 133 | 0.64 | 0.87 | 20 | FAD |
Interfaces
15 interfaces between chains.
- E–J · 824 Ų buried · 12 hydrogen bonds · protein-protein
- B–G · 808 Ų buried · 14 hydrogen bonds · protein-protein
- A–F · 802 Ų buried · 11 hydrogen bonds · protein-protein
- C–H · 799 Ų buried · 14 hydrogen bonds · protein-protein
- D–I · 794 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 1X0P · Structure of a cyanobacterial BLUF protein, Tll0078 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DMN3
- Elsewhere: RCSB PDB 1X0P · PDBe 1X0P · UniProt Q8DMN3
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