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Crystal structure of the polyisoprenoid-binding protein, TT1927B, from thermus thermophilus HB8

Analyse Crystal structure of the polyisoprenoid-binding protein, TT1927B, from thermus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1WUB
Type: protein
Length: 176 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Conserved hypothetical protein TT1927B
UniProt: P83815
Ligands: OTP
Pockets: 1 · best druggability 0.86

Structure

x-ray diffraction · 1 distinct chain · 9% helix, 59% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Conserved hypothetical protein TT1927B	protein	176	9% helix, 59% strand	P83815

Ligands and binding sites

OTP · (2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-octamethyldotriaconta-2,6,10,14,18,22,26,30-octaenyl trihydrogen diphosphate · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	471	0.86	0.92	59	OTP

Compared structures

1WUB · Crystal structure of the polyisoprenoid-binding protein, TT1927b, from Thermus… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P83815
Elsewhere: RCSB PDB 1WUB · PDBe 1WUB · UniProt P83815

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