Research workbench
Crystal structure of reducing-end-xylose releasing exo-oligoxylanase complexed with xylose
Analyse Crystal structure of reducing-end-xylose releasing exo-oligoxylanase complexed… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1WU5
- Type
- protein
- Length
- 376 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Xylanase Y
- EC
- 3.2.1.156
- UniProt
- Q9KB30
- Ligands
- XYP, NI
- Pockets
- 2 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Xylanase Y (EC 3.2.1.156) | protein | 376 | 51% helix, 9% strand | Q9KB30 |
Ligands and binding sites
- XYP · beta-D-xylopyranose · sugar · chains A
- NI · Nickel (II) ion · metal · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 225 | 0.58 | 0.80 | 33 | XYP |
| 2 | 52 | 0.45 | 0.84 | 15 | empty |
Compared structures
- 1WU5 · Crystal structure of reducing-end-xylose releasing exo-oligoxylanase complexed with xylose · the same entry in another collection · chain A against A, TM-score 1.00
- Q9KB30 · AlphaFold monomer V2.0 prediction for reducing end xylose-releasing exo-oligoxylanase… · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KB30
- Elsewhere: RCSB PDB 1WU5 · PDBe 1WU5 · UniProt Q9KB30
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