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Alkaline M-protease form I crystal structure

Analyse Alkaline M-protease form I crystal structure in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1WSD
Type: protein
Length: 269 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: M-protease
EC: 3.4.21.-
UniProt: Q99405
Ligands: CA, SO4
Pockets: 1 · best druggability 0.32

Structure

x-ray diffraction · 1 distinct chain · 31% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	M-protease (EC 3.4.21.-)	protein	269	31% helix, 21% strand	Q99405

Ligands and binding sites

CA · Calcium ion · metal · chains A
SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	81	0.32	0.74	24	empty

Compared structures

1WSD · Alkaline M-protease form I crystal structure · the same entry in another collection · chain A against A, TM-score 1.00
Q99405 · AlphaFold monomer V2.0 prediction for M-protease (Q99405) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q99405
Elsewhere: RCSB PDB 1WSD · PDBe 1WSD · UniProt Q99405

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