GL1X · GenesisL1 explorer

Research workbench

2.2 ångströms resolution structure analysis of two refined N- acetylneuraminyllactose-wheat germ agglutinin isolectin complexes

Analyse 2.2 ångströms resolution structure analysis of two refined N… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
1WGC
Type
protein
Length
342 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Wheat germ lectin
UniProt
P10968
Ligands
BGC, GAL, SIA
Pockets
1 · best druggability 0.63

Structure

x-ray diffraction · 1 distinct chain · 17% helix, 17% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
A, BWheat germ lectinprotein17117% helix, 17% strandP10968

Ligands and binding sites

  • BGC · beta-D-glucopyranose · sugar · 2 copies
  • GAL · beta-D-galactopyranose · sugar · 2 copies
  • SIA · N-acetyl-alpha-neuraminic acid · sugar · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
14550.630.7755empty

Interfaces

1 interface between chains.

  • A–B · 246 Ų buried · 4 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 32 disulfide, 2 modified (disulfide, cyclization).

Compared structures

  • 1WGC · 2.2 ångströms resolution structure analysis of two refined… · the same entry in another collection · chain A against A, TM-score 1.00
  • P10968 · AlphaFold monomer V2.0 prediction for agglutinin isolectin 1 (P10968) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.