Research workbench
Crystal structure of TTK003000868 from thermus thermophilus HB8
Analyse Crystal structure of TTK003000868 from thermus thermophilus HB8 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1WDT
- Type
- protein
- Length
- 660 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Elongation factor G homolog
- UniProt
- Q5SI76
- Ligands
- GTP, MG
- Pockets
- 5 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Elongation factor G homolog | protein | 660 | 32% helix, 31% strand | Q5SI76 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 244 | 0.63 | 0.81 | 33 | empty |
| 2 | 171 | 0.59 | 0.82 | 29 | empty |
| 3 | 330 | 0.59 | 0.77 | 33 | empty |
| 4 | 145 | 0.54 | 0.81 | 27 | MG, GTP |
| 5 | 60 | 0.42 | 0.81 | 16 | empty |
Compared structures
- 1WDT · Crystal structure of ttk003000868 from Thermus thermophilus HB8 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SI76
- Elsewhere: RCSB PDB 1WDT · PDBe 1WDT · UniProt Q5SI76
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