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Solution structure of the C-terminal ring from a ring-ibr-ring (triad) motif

Analyse Solution structure of the C-terminal ring from a ring-ibr-ring (triad) motif in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1WD2
Type: protein
Length: 60 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ariadne-1 protein homolog
EC: 6.3.2.19
UniProt: Q9Y4X5
Ligands: ZN
Pockets: 1 · best druggability 0.49

Structure

solution nmr · 1 distinct chain · 12% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ariadne-1 protein homolog (EC 6.3.2.19)	protein	60	12% helix, 0% strand	Q9Y4X5

Ligands and binding sites

ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	196	0.49	0.76	26	empty

Compared structures

1WD2 · Solution Structure of the C-terminal RING from a RING-IBR-RING (TRIAD) motif · the same entry in another collection · chain A against A, TM-score 1.00
Q9Y4X5 · AlphaFold monomer V2.0 prediction for E3 ubiquitin-protein ligase ARIH1 (Q9Y4X5) · a predicted model of the same protein · chain A against A, TM-score 0.39

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9Y4X5
Elsewhere: RCSB PDB 1WD2 · PDBe 1WD2 · UniProt Q9Y4X5

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