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Csdb protein, nifs homologue

Analyse Csdb protein, nifs homologue in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1C0N
Type: protein
Length: 404 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein (csdb protein)
UniProt: P77444
Ligands: PLP
Pockets: 4 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein (csdb protein)	protein	404	41% helix, 18% strand	P77444

Ligands and binding sites

PLP · Pyridoxal-5'-phosphate · ligand · chains A
ACY · Acetic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	104	0.52	0.83	19	empty
2	94	0.47	0.81	26	PLP, ACY
3	54	0.34	0.78	13	empty
4	51	0.31	0.77	13	empty

Modifications

Observed in the structure: 1 cofactor (pyridoxal phosphate Schiff base).

Compared structures

1C0N · Csdb protein, nifs homologue · the same entry in another collection · chain A against A, TM-score 1.00
P77444 · AlphaFold monomer V2.0 prediction for cysteine desulfurase (P77444) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P77444
Elsewhere: RCSB PDB 1C0N · PDBe 1C0N · UniProt P77444

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