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Three dimensional structure of a novel pore-forming lectin from the mushroom laetiporus sulphureus

Analyse Three dimensional structure of a novel pore-forming lectin from the mushroom… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1W3A
Type: protein
Length: 312 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hemolytic lectin lsla
UniProt: Q7Z8V1
Ligands: GLC, GAL
Pockets: 1 · best druggability 0.47

Structure

x-ray diffraction · 1 distinct chain · 6% helix, 51% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hemolytic lectin lsla	protein	312	6% helix, 51% strand	Q7Z8V1

Ligands and binding sites

GLC · alpha-D-glucopyranose · sugar · chains A
GAL · beta-D-galactopyranose · sugar · chains A
GOL · Glycerol · additive · 6 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	171	0.47	0.76	30	GOL

Compared structures

1W3A · Three dimensional structure of a novel pore-forming lectin from the mushroom Laetiporus… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7Z8V1
Elsewhere: RCSB PDB 1W3A · PDBe 1W3A · UniProt Q7Z8V1

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