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Schistosoma mansoni fatty acid binding protein in complex with arachidonic acid

Analyse Schistosoma mansoni fatty acid binding protein in complex with arachidonic acid in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1VYG
Type: protein
Length: 135 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Fatty acid binding protein
UniProt: P29498
Ligands: ACD
Pockets: 1 · best druggability 0.85

Structure

x-ray diffraction · 1 distinct chain · 11% helix, 55% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Fatty acid binding protein	protein	135	11% helix, 55% strand	P29498

Ligands and binding sites

ACD · Arachidonic acid · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	314	0.85	0.95	38	ACD

Compared structures

1VYG · schistosoma mansoni fatty acid binding protein in complex with arachidonic acid · the same entry in another collection · chain A against A, TM-score 1.00
P29498 · AlphaFold monomer V2.0 prediction for 14 kda fatty acid-binding protein (P29498) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P29498
Elsewhere: RCSB PDB 1VYG · PDBe 1VYG · UniProt P29498

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