Research workbench

Structure of AAC(6')-ib in complex with kanamycin C and acetylcoa.

Analyse Structure of AAC(6')-ib in complex with kanamycin C and acetylcoa. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1V0C
Type: protein
Length: 176 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: AAC(6')-ib
EC: 2.3.1.82
UniProt: Q6SJ71
Ligands: ACO, KNC, CA
Pockets: 1 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 34% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	AAC(6')-ib (EC 2.3.1.82)	protein	176	34% helix, 30% strand	Q6SJ71

Ligands and binding sites

ACO · Acetyl coenzyme *A · ligand · chains A
KNC · Kanamycin C · ligand · chains A
CA · Calcium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	595	0.75	0.81	55	ACO, KNC

Compared structures

1V0C · Structure of AAC(6')-Ib in complex with Kanamycin C and AcetylCoA. · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6SJ71
Elsewhere: RCSB PDB 1V0C · PDBe 1V0C · UniProt Q6SJ71

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.