Research workbench
The crystal structure of wheat non-specific transfer protein complexed with two molecules of phospholipid at 2.1 a resolution
Analyse The crystal structure of wheat non-specific transfer protein complexed with two… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1BWO
- Type
- protein
- Length
- 180 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nonspecific lipid-transfer protein
- UniProt
- P24296
- Ligands
- LPC
- Pockets
- 2 · best druggability 0.84
Structure
x-ray diffraction · 1 distinct chain · 62% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Nonspecific lipid-transfer protein | protein | 90 | 62% helix, 0% strand | P24296 |
Ligands and binding sites
- LPC · [1-myristoyl-glycerol-3-yl]phosphonylcholine · ligand · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 417 | 0.84 | 0.91 | 33 | LPC |
| 2 | 416 | 0.82 | 0.90 | 34 | LPC |
Modifications
Observed in the structure: 8 disulfide (disulfide).
Compared structures
- 1BWO · The crystal structure of wheat non-specific transfer protein complexed with two molecules… · the same entry in another collection · chain A against A, TM-score 1.00
- P24296 · AlphaFold monomer V2.0 prediction for non-specific lipid-transfer protein (P24296) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P24296
- Elsewhere: RCSB PDB 1BWO · PDBe 1BWO · UniProt P24296
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.