Research workbench
Crystal structures of unliganded and half-liganded human hemoglobin derivatives cross-linked between lys 82BETA1 and lys 82BETA2
Analyse Crystal structures of unliganded and half-liganded human hemoglobin derivatives… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1UIW
- Type
- protein
- Length
- 1,147 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hemoglobin alpha chain; Hemoglobin beta chain
- UniProt
- P69905, P68871
- Ligands
- HEM, 2FU
- Pockets
- 20 · best druggability 0.80
Structure
x-ray diffraction · 3 distinct chains · 77% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, E, G | Hemoglobin alpha chain | protein | 141 | 77% helix, 0% strand | P69905 |
| B, D, H | Hemoglobin beta chain | protein | 146 | 79% helix, 0% strand | P68871 |
| F | Hemoglobin beta chain | protein | 145 | 74% helix, 0% strand | P68871 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · 8 copies · chains A, B, C, D, E, F, G, H
- 2FU · But-2-enedial · ligand · 2 copies · chains B, D, F, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
20 pockets found on a 1 Å grid, 12 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 746 | 0.80 | 0.84 | 67 | empty |
| 2 | 726 | 0.79 | 0.83 | 73 | empty |
| 3 | 249 | 0.76 | 0.88 | 31 | HEM |
| 4 | 258 | 0.74 | 0.87 | 29 | HEM |
| 5 | 257 | 0.74 | 0.87 | 30 | HEM |
Interfaces
15 interfaces between chains.
- E–F · 864 Ų buried · 9 hydrogen bonds · protein-protein
- G–H · 861 Ų buried · 9 hydrogen bonds · protein-protein
- A–B · 859 Ų buried · 9 hydrogen bonds · protein-protein
- C–D · 854 Ų buried · 9 hydrogen bonds · protein-protein
- E–H · 726 Ų buried · 9 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 covalent (covalent ligand).
Compared structures
- 1UIW · Crystal Structures of Unliganded and Half-Liganded Human Hemoglobin Derivatives… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P69905
- Every structure of UniProt P68871
- Elsewhere: RCSB PDB 1UIW · PDBe 1UIW · UniProt P69905 · UniProt P68871
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