Research workbench
Crystal structure of glucodextranase from arthrobacter globiformis I42
Analyse Crystal structure of glucodextranase from arthrobacter globiformis I42 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1UG9
- Type
- protein
- Length
- 1,019 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glucodextranase
- EC
- 3.2.1.70
- UniProt
- Q9LBQ9
- Ligands
- CA
- Pockets
- 6 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glucodextranase (EC 3.2.1.70) | protein | 1019 | 26% helix, 29% strand | Q9LBQ9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 240 | 0.60 | 0.80 | 28 | empty |
| 2 | 114 | 0.46 | 0.79 | 19 | empty |
| 3 | 157 | 0.42 | 0.74 | 29 | empty |
| 4 | 57 | 0.40 | 0.81 | 16 | empty |
| 5 | 84 | 0.37 | 0.76 | 15 | empty |
Compared structures
- 1UG9 · Crystal Structure of Glucodextranase from Arthrobacter globiformis I42 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9LBQ9
- Elsewhere: RCSB PDB 1UG9 · PDBe 1UG9 · UniProt Q9LBQ9
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