Research workbench
Refined crystal structure of calcium-bound silver hake (pi 4.2) parvalbumin at 1.65 a.
Analyse Refined crystal structure of calcium-bound silver hake (pi 4.2) parvalbumin at… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1BU3
- Type
- protein
- Length
- 108 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Calcium-binding protein
- UniProt
- P56503
- Ligands
- ACE, CA
- Pockets
- 1 · best druggability 0.36
Structure
x-ray diffraction · 1 distinct chain · 56% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Calcium-binding protein | protein | 108 | 56% helix, 4% strand | P56503 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 63 | 0.36 | 0.77 | 14 | empty |
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 1BU3 · Refined crystal structure of calcium-bound silver hake (pi 4.2) parvalbumin at 1.65 a. · the same entry in another collection · chain A against A, TM-score 1.00
- P56503 · AlphaFold monomer V2.0 prediction for parvalbumin beta (P56503) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P56503
- Elsewhere: RCSB PDB 1BU3 · PDBe 1BU3 · UniProt P56503
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