Research workbench
Structure and function of phenazine-biosynthesis protein phzf from pseudomonas fluorescens 2-79
Analyse Structure and function of phenazine-biosynthesis protein phzf from pseudomonas… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1U1W
- Type
- protein
- Length
- 557 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phenazine biosynthesis protein phzf
- UniProt
- Q51792
- Ligands
- 3HA
- Pockets
- 1 · best druggability 0.75
Structure
x-ray diffraction · 2 distinct chains · 21% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phenazine biosynthesis protein phzf | protein | 278 | 22% helix, 43% strand | Q51792 |
| B | Phenazine biosynthesis protein phzf | protein | 279 | 20% helix, 43% strand | Q51792 |
Ligands and binding sites
- 3HA · 3-hydroxyanthranilic acid · ligand · 2 copies · chains A, B
- ACT · Acetate ion · additive · 2 copies · chains A
- GOL · Glycerol · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 815 | 0.75 | 0.80 | 67 | GOL |
Interfaces
1 interface between chains.
- A–B · 1456 Ų buried · 26 hydrogen bonds · protein-protein
Compared structures
- 1U1W · Structure and function of phenazine-biosynthesis protein PhzF from Pseudomonas… · the same entry in another collection · chain A against A, TM-score 1.00
- Q51792 · AlphaFold monomer V2.0 prediction for trans-2,3-dihydro-3-hydroxyanthranilate isomerase… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q51792
- Elsewhere: RCSB PDB 1U1W · PDBe 1U1W · UniProt Q51792
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