Research workbench
Crystal structure of liganded type 2 non specific lipid transfer protein from wheat
Analyse Crystal structure of liganded type 2 non specific lipid transfer protein from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1TUK
- Type
- protein
- Length
- 67 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nonspecific lipid-transfer protein 2G
- UniProt
- P82900
- Ligands
- PGM, IOD
- Pockets
- 2 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 64% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nonspecific lipid-transfer protein 2G | protein | 67 | 64% helix, 0% strand | P82900 |
Ligands and binding sites
- PGM · 1-myristoyl-2-hydroxy-sn-glycero-3-[phospho-rac-(1-glycerol)] · ligand · 2 copies · chains A
- IOD · Iodide ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 88 | 0.58 | 0.86 | 17 | empty |
| 2 | 50 | 0.37 | 0.80 | 11 | PGM |
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 1TUK · Crystal structure of liganded type 2 non specific lipid transfer protein from wheat · the same entry in another collection · chain A against A, TM-score 1.00
- P82900 · AlphaFold monomer V2.0 prediction for non-specific lipid-transfer protein 2G (P82900) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P82900
- Elsewhere: RCSB PDB 1TUK · PDBe 1TUK · UniProt P82900
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