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Homology model of yeast RACK1 protein fitted into 11.7A cryo-EM MAP of yeast 80S ribosome

Analyse Homology model of yeast RACK1 protein fitted into 11.7A cryo-EM MAP of yeast… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1TRJ
Type: protein
Length: 314 residues
Chains: 1
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Guanine nucleotide-binding protein beta subunit-like protein
UniProt: P38011
Pockets: 5 · best druggability 0.41

Structure

electron microscopy · 1 distinct chain · 0% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Guanine nucleotide-binding protein beta subunit-like protein	protein	314	0% helix, 0% strand	P38011

Pockets

5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	135	0.41	0.73	39	empty
2	124	0.41	0.73	31	empty
3	94	0.37	0.73	32	empty
4	77	0.36	0.74	28	empty
5	65	0.31	0.73	24	empty

Compared structures

1TRJ · Homology Model of Yeast RACK1 Protein fitted into 11.7A cryo-EM map of Yeast 80S Ribosome · the same entry in another collection · chain A against A, TM-score 1.00
P38011 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein subunit… · a predicted model of the same protein · chain A against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P38011
Elsewhere: RCSB PDB 1TRJ · PDBe 1TRJ · UniProt P38011

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