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Crystal structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase of candida albicans in complex with ribulose-5-phosphate

Analyse Crystal structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase of candida… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1TKU
Type: protein
Length: 392 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 3,4-dihydroxy-2-butanone 4-phosphate synthase
EC: 5.4.99.-
Ligands: 5RP
Pockets: 3 · best druggability 0.56

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 5.4.99.-)	protein	196	38% helix, 24% strand	—

Ligands and binding sites

5RP · Ribulose-5-phosphate · ligand · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	220	0.56	0.79	31	5RP
2	200	0.54	0.78	23	5RP
3	59	0.31	0.76	11	empty

Interfaces

1 interface between chains.

A–B · 1195 Å² buried · 9 hydrogen bonds · protein-protein

Compared structures

1TKU · Crystal Structure of 3,4-Dihydroxy-2-buta 4-phosphate Synthase of Candida albicans in… · the same entry in another collection · chain A against A, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1TKU · PDBe 1TKU

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