Research workbench
Thermostable B type DNA polymerase from thermococcus gorgonarius
Analyse Thermostable B type DNA polymerase from thermococcus gorgonarius in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1TGO
- Type
- protein
- Length
- 773 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein (thermostable B DNA polymerase)
- EC
- 2.7.7.7
- UniProt
- P56689
- Pockets
- 10 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein (thermostable B DNA polymerase) (EC 2.7.7.7) | protein | 773 | 40% helix, 23% strand | P56689 |
Pockets
10 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 525 | 0.77 | 0.84 | 50 | empty |
| 2 | 498 | 0.68 | 0.79 | 55 | empty |
| 3 | 338 | 0.59 | 0.77 | 48 | empty |
| 4 | 242 | 0.58 | 0.79 | 29 | empty |
| 5 | 181 | 0.53 | 0.78 | 33 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P56689
- Elsewhere: RCSB PDB 1TGO · PDBe 1TGO · UniProt P56689
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