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Structural genomics of caenorhabditis elegans: structure of a protein with unknown function

Analyse Structural genomics of caenorhabditis elegans: structure of a protein with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1T9F
Type: protein
Length: 178 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein 1D10
UniProt: O61793
Pockets: 1 · best druggability 0.37

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein 1D10	protein	178	3% helix, 43% strand	O61793

Ligands and binding sites

MLI · Malonate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	58	0.37	0.79	15	empty

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

1T9F · Structural genomics of Caenorhabditis elegans: Structure of a protein with unknown… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

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Every structure of UniProt O61793
Elsewhere: RCSB PDB 1T9F · PDBe 1T9F · UniProt O61793

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