Research workbench
Crystal structure of the androgen receptor ligand binding domain in complex with a fxxlw motif
Analyse Crystal structure of the androgen receptor ligand binding domain in complex… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1T79
- Type
- protein
- Length
- 258 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Androgen receptor; Fxxlw motif peptide
- UniProt
- O97775
- Ligands
- DHT
- Pockets
- 2 · best druggability 0.83
Structure
x-ray diffraction · 2 distinct chains · 67% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Androgen receptor | protein | 250 | 68% helix, 5% strand | O97775 |
| B | Fxxlw motif peptide | protein | 8 | 50% helix, 0% strand | — |
Ligands and binding sites
- DHT · 5-alpha-dihydrotestosterone · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 159 | 0.83 | 0.98 | 21 | DHT |
| 2 | 142 | 0.63 | 0.85 | 25 | empty |
Interfaces
1 interface between chains.
- A–B · 485 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 1T79 · Crystal structure of the androgen receptor ligand binding domain in complex with a FxxLW… · the same entry in another collection · chain A against A, TM-score 1.00
- O97775 · AlphaFold monomer V2.0 prediction for androgen receptor (O97775) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O97775
- Elsewhere: RCSB PDB 1T79 · PDBe 1T79 · UniProt O97775
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