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Use of an ion-binding site to bypass the 1000-atom limit to ab initio structure determination by direct methods

Analyse Use of an ion-binding site to bypass the 1000-atom limit to ab initio structure… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1SX7
Type: protein
Length: 164 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lysozyme
EC: 3.2.1.17
UniProt: P00720
Ligands: RB, CL
Pockets: 1 · best druggability 0.50

Structure

x-ray diffraction · 1 distinct chain · 62% helix, 8% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lysozyme (EC 3.2.1.17)	protein	164	62% helix, 8% strand	P00720

Ligands and binding sites

RB · Rubidium ion · metal · 5 copies · chains A
CL · Chloride ion · ion · 4 copies · chains A
BME · Beta-mercaptoethanol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	201	0.50	0.76	26	RB

Compared structures

1SX7 · Use of an ion-binding site to bypass the 1000-atom limit to ab initio structure… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00720
Elsewhere: RCSB PDB 1SX7 · PDBe 1SX7 · UniProt P00720

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