GL1X · GenesisL1 explorer

Research workbench

Subtilisin bpn' at 1.6 ångströms resolution: analysis of discrete disorder and comparison of crystal forms

Analyse Subtilisin bpn' at 1.6 ångströms resolution: analysis of discrete disorder and… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
1SUP
Type
protein
Length
275 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Subtilisin bpn'
EC
3.4.21.62
UniProt
P00782
Ligands
PMS, CA, NA
Pockets
1 · best druggability 0.42

Structure

x-ray diffraction · 1 distinct chain · 30% helix, 20% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ASubtilisin bpn' (EC 3.4.21.62)protein27530% helix, 20% strandP00782

Ligands and binding sites

  • PMS · phenylmethanesulfonic acid · ligand · chains A
  • CA · Calcium ion · metal · chains A
  • NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
11310.420.7634PMS

Modifications

Observed in the structure: 1 covalent (covalent ligand).

Compared structures

  • 1SUP · Subtilisin bpn' at 1.6 ångströms resolution: analysis of discrete disorder and comparison… · the same entry in another collection · chain A against A, TM-score 1.00
  • P00782 · AlphaFold monomer V2.0 prediction for subtilisin bpn' (P00782) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.