Research workbench

Multidrug-binding domain of transcription activator bmrr (apo form)

Analyse Multidrug-binding domain of transcription activator bmrr (apo form) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1BOW
Type: protein
Length: 143 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Multidrug-efflux transporter 1 regulator bmrr
UniProt: P39075
Ligands: MN
Pockets: 1 · best druggability 0.34

Structure

x-ray diffraction · 1 distinct chain · 20% helix, 40% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Multidrug-efflux transporter 1 regulator bmrr	protein	143	20% helix, 40% strand	P39075

Ligands and binding sites

MN · Manganese (II) ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	81	0.34	0.74	20	empty

Compared structures

1BOW · Multidrug-binding domain of transcription activator bmrr (apo form) · the same entry in another collection · chain A against A, TM-score 1.00
P39075 · AlphaFold monomer V2.0 prediction for multidrug-efflux transporter 1 regulator (P39075) · a predicted model of the same protein · chain A against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P39075
Elsewhere: RCSB PDB 1BOW · PDBe 1BOW · UniProt P39075

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