Research workbench
Structure of E. COLI tRNA psi 13 pseudouridine synthase trud
Analyse Structure of E. COLI tRNA psi 13 pseudouridine synthase trud in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1SI7
- Type
- protein
- Length
- 340 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- TRNA pseudouridine synthase D
- EC
- 4.2.1.70
- UniProt
- Q57261
- Pockets
- 2 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | TRNA pseudouridine synthase D (EC 4.2.1.70) | protein | 340 | 31% helix, 26% strand | Q57261 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 913 | 0.74 | 0.78 | 83 | empty |
| 2 | 57 | 0.33 | 0.77 | 14 | empty |
Compared structures
- 1SI7 · Structure of E. coli tRNA psi 13 pseudouridine synthase TruD · the same entry in another collection · chain A against A, TM-score 1.00
- Q57261 · AlphaFold monomer V2.0 prediction for tRNA pseudouridine synthase D (Q57261) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q57261
- Elsewhere: RCSB PDB 1SI7 · PDBe 1SI7 · UniProt Q57261
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