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N-terminal region of the CA2+-saturated calcium regulatory domain (cld) from soybean calcium-dependent protein kinase-alpha (cdpk)

Analyse N-terminal region of the CA2+-saturated calcium regulatory domain (cld) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1S6J
Type: protein
Length: 87 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Calcium-dependent protein kinase SK5
EC: 2.7.1.-
UniProt: P28583
Ligands: CA
Pockets: 1 · best druggability 0.39

Structure

solution nmr · 1 distinct chain · 38% helix, 5% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Calcium-dependent protein kinase SK5 (EC 2.7.1.-)	protein	87	38% helix, 5% strand	P28583

Ligands and binding sites

CA · Calcium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	65	0.39	0.79	14	empty

Compared structures

1S6J · N-terminal Region of the Ca2+-saturated calcium regulatory domain (CLD) from Soybean… · the same entry in another collection · chain A against A, TM-score 1.00
P28583 · AlphaFold monomer V2.0 prediction for calcium-dependent protein kinase SK5 (P28583) · a predicted model of the same protein · chain A against A, TM-score 0.56

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P28583
Elsewhere: RCSB PDB 1S6J · PDBe 1S6J · UniProt P28583

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