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CA2+-regulatory region (cld) from soybean calcium-dependent protein kinase-alpha (cdpk) in the presence of CA2+ and the junction domain (jd)
Analyse CA2+-regulatory region (cld) from soybean calcium-dependent protein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1S6I
- Type
- protein
- Length
- 182 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Calcium-dependent protein kinase SK5
- EC
- 2.7.1.-
- UniProt
- P28583
- Ligands
- CA
- Pockets
- 2 · best druggability 0.64
Structure
solution nmr · 1 distinct chain · 31% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Calcium-dependent protein kinase SK5 (EC 2.7.1.-) | protein | 182 | 31% helix, 5% strand | P28583 |
Ligands and binding sites
- CA · Calcium ion · metal · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 305 | 0.64 | 0.80 | 31 | empty |
| 2 | 92 | 0.47 | 0.79 | 18 | empty |
Compared structures
- 1S6I · Ca2+-regulatory region (CLD) from soybean calcium-dependent protein kinase-alpha (CDPK)… · the same entry in another collection · chain A against A, TM-score 1.00
- P28583 · AlphaFold monomer V2.0 prediction for calcium-dependent protein kinase SK5 (P28583) · a predicted model of the same protein · chain A against A, TM-score 0.41
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P28583
- Elsewhere: RCSB PDB 1S6I · PDBe 1S6I · UniProt P28583
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