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Structure of a possible uridine kinase from bacillus stearothermophilus

Analyse Structure of a possible uridine kinase from bacillus stearothermophilus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1RZ3
Type: protein
Length: 184 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein RBSTP0775
UniProt: P84134
Ligands: CA
Pockets: 1 · best druggability 0.31

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein RBSTP0775	protein	184	43% helix, 23% strand	P84134

Ligands and binding sites

CA · Calcium ion · metal · chains A
ACT · Acetate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	74	0.31	0.74	20	empty

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

1RZ3 · Structure of a Possible Uridine Kinase from Bacillus stearothermophilus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P84134
Elsewhere: RCSB PDB 1RZ3 · PDBe 1RZ3 · UniProt P84134

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