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Non-myristoylated rat ADP-ribosylation factor-1 complexed with GDP, dimeric crystal form
Analyse Non-myristoylated rat ADP-ribosylation factor-1 complexed with GDP, dimeric… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1RRG
- Type
- protein
- Length
- 354 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rat ADP-ribosylation factor-1
- UniProt
- P84079
- Ligands
- GDP, MG
- Pockets
- 1 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Rat ADP-ribosylation factor-1 | protein | 177 | 34% helix, 27% strand | P84079 |
Ligands and binding sites
- GDP · Guanosine-5'-diphosphate · ligand · 2 copies · chains A, B
- MG · Magnesium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 432 | 0.63 | 0.77 | 56 | MG, GDP |
Interfaces
1 interface between chains.
- A–B · 586 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 1RRG · Non-myristoylated rat ADP-ribosylation factor-1 complexed with GDP, dimeric crystal form · the same entry in another collection · chain A against A, TM-score 1.00
- P84079 · AlphaFold monomer V2.0 prediction for ADP-ribosylation factor 1 (P84079) · a predicted model of the same protein · chain A against A, TM-score 0.81
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P84079
- Elsewhere: RCSB PDB 1RRG · PDBe 1RRG · UniProt P84079
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