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The complex structure of the MAP kinase P38/SB220025
Analyse The complex structure of the MAP kinase P38/SB220025 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1BL7
- Type
- protein
- Length
- 351 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein (MAP kinase P38)
- UniProt
- Q16539
- Ligands
- SB4
- Pockets
- 5 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein (MAP kinase P38) | protein | 351 | 37% helix, 15% strand | Q16539 |
Ligands and binding sites
- SB4 · 4-(4-fluorophenyl)-1-(4-piperidinyl)-5-(2-amino-4-pyrimidinyl)-imidazole · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 531 | 0.74 | 0.82 | 59 | SB4 |
| 2 | 105 | 0.43 | 0.77 | 17 | empty |
| 3 | 104 | 0.39 | 0.76 | 23 | empty |
| 4 | 67 | 0.30 | 0.73 | 15 | empty |
| 5 | 54 | 0.28 | 0.74 | 15 | empty |
Compared structures
- 1BL7 · The complex structure of the MAP kinase P38/SB220025 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q16539
- Elsewhere: RCSB PDB 1BL7 · PDBe 1BL7 · UniProt Q16539
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