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The structure of adrenal gland protein ad-004

Analyse The structure of adrenal gland protein ad-004 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1RKB
Type: protein
Length: 173 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein ad-004
UniProt: Q9Y3D8
Ligands: LI, SO4
Pockets: 1 · best druggability 0.48

Structure

x-ray diffraction · 1 distinct chain · 53% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein ad-004	protein	173	53% helix, 14% strand	Q9Y3D8

Ligands and binding sites

LI · Lithium ion · metal · 3 copies · chains A
SO4 · Sulfate ion · ion · 5 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	243	0.48	0.74	38	SO4

Compared structures

1RKB · The structure of adrenal gland protein AD-004 · the same entry in another collection · chain A against A, TM-score 1.00
Q9Y3D8 · AlphaFold monomer V2.0 prediction for adenylate kinase isoenzyme 6 (Q9Y3D8) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9Y3D8
Elsewhere: RCSB PDB 1RKB · PDBe 1RKB · UniProt Q9Y3D8

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