Research workbench
Crystal structure of potato calmodulin PCM6
Analyse Crystal structure of potato calmodulin PCM6 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1RFJ
- Type
- protein
- Length
- 148 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Calmodulin
- UniProt
- Q42478
- Ligands
- CA
- Pockets
- 2 · best druggability 0.45
Structure
x-ray diffraction · 1 distinct chain · 61% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Calmodulin | protein | 148 | 61% helix, 4% strand | Q42478 |
Ligands and binding sites
- CA · Calcium ion · metal · 4 copies · chains A
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 79 | 0.45 | 0.79 | 12 | empty |
| 2 | 67 | 0.43 | 0.80 | 12 | MPD |
Compared structures
- 1RFJ · Crystal Structure of Potato Calmodulin PCM6 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q42478
- Elsewhere: RCSB PDB 1RFJ · PDBe 1RFJ · UniProt Q42478
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