Research workbench
Crystal structure of recombinant bovine neurocalcin delta at 2.4 ångströms
Analyse Crystal structure of recombinant bovine neurocalcin delta at 2.4 ångströms in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1BJF
- Type
- protein
- Length
- 362 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Neurocalcin delta
- UniProt
- P61602
- Ligands
- CA
- Pockets
- 5 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 59% helix, 6% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Neurocalcin delta | protein | 181 | 59% helix, 6% strand | P61602 |
Ligands and binding sites
- CA · Calcium ion · metal · 6 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 698 | 0.77 | 0.82 | 86 | empty |
| 2 | 203 | 0.58 | 0.80 | 23 | empty |
| 3 | 207 | 0.56 | 0.79 | 25 | empty |
| 4 | 65 | 0.30 | 0.75 | 13 | empty |
| 5 | 68 | 0.29 | 0.73 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 1234 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 1BJF · Crystal structure of recombinant bovine neurocalcin delta at 2.4 ångströms · the same entry in another collection · chain A against A, TM-score 1.00
- P61602 · AlphaFold monomer V2.0 prediction for neurocalcin-delta (P61602) · a predicted model of the same protein · chain A against A, TM-score 0.90
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P61602
- Elsewhere: RCSB PDB 1BJF · PDBe 1BJF · UniProt P61602
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