Research workbench
Crystal structure of the 4'-phosphopantetheinyl transferase sfp- coenzyme a complex
Analyse Crystal structure of the 4'-phosphopantetheinyl transferase sfp- coenzyme a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1QR0
- Type
- protein
- Length
- 228 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 4'-phosphopantetheinyl transferase sfp
- UniProt
- P39135
- Ligands
- COA, MG
- Pockets
- 4 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 4'-phosphopantetheinyl transferase sfp | protein | 228 | 37% helix, 23% strand | P39135 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 223 | 0.52 | 0.77 | 30 | MG, COA |
| 2 | 70 | 0.36 | 0.77 | 20 | empty |
| 3 | 67 | 0.32 | 0.75 | 17 | empty |
| 4 | 64 | 0.29 | 0.74 | 16 | empty |
Compared structures
- 1QR0 · Crystal structure of the 4'-phosphopantetheinyl transferase sfp-coenzyme a complex · the same entry in another collection · chain A against A, TM-score 1.00
- P39135 · AlphaFold monomer V2.0 prediction for 4'-phosphopantetheinyl transferase sfp (P39135) · a predicted model of the same protein · chain A against A, TM-score 0.87
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P39135
- Elsewhere: RCSB PDB 1QR0 · PDBe 1QR0 · UniProt P39135
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