Research workbench
Human insulin hexamers with chain B his mutated to tyr complexed with phenol
Analyse Human insulin hexamers with chain B his mutated to tyr complexed with phenol in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1QIY
- Type
- protein
- Length
- 306 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Insulin a chain; Insulin B chain
- UniProt
- P01308
- Ligands
- IPH, ZN, CL
- Pockets
- 10 · best druggability 0.85
Structure
x-ray diffraction · 2 distinct chains · 61% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, E, G, I, K | Insulin a chain | protein | 21 | 48% helix, 5% strand | P01308 |
| B, D, F, H, J, L | Insulin B chain | protein | 30 | 70% helix, 10% strand | P01308 |
Ligands and binding sites
- IPH · Phenol · ligand · 6 copies · chains A, B, F, H, C, D, J, L, E, G, I, K
- ZN · Zinc ion · metal · 2 copies · chains B, F, J, D, H, L
- CL · Chloride ion · ion · 2 copies · chains B, F, J, D, H, L
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
10 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 560 | 0.85 | 0.90 | 92 | IPH |
| 2 | 92 | 0.75 | 0.96 | 19 | IPH |
| 3 | 82 | 0.73 | 0.96 | 19 | IPH |
| 4 | 128 | 0.50 | 0.80 | 23 | CL |
| 5 | 139 | 0.47 | 0.77 | 21 | empty |
Interfaces
39 interfaces between chains.
- J–L · 789 Ų buried · 10 hydrogen bonds · protein-protein
- B–D · 771 Ų buried · 8 hydrogen bonds · protein-protein
- F–H · 763 Ų buried · 9 hydrogen bonds · protein-protein
- E–F · 667 Ų buried · 2 hydrogen bonds · protein-protein
- A–B · 658 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 18 disulfide (disulfide).
Compared structures
- 1QIY · Human insulin hexamers with chain B his mutated to tyr complexed with phenol · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P01308
- Elsewhere: RCSB PDB 1QIY · PDBe 1QIY · UniProt P01308
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