Research workbench
Endoglucanase CEL5A from bacillus agaradhaerens in the tetragonal crystal form in complex with cellobiose
Analyse Endoglucanase CEL5A from bacillus agaradhaerens in the tetragonal crystal form… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1QI0
- Type
- protein
- Length
- 302 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endoglucanase B
- EC
- 3.2.1.4
- UniProt
- P06565
- Ligands
- BGC, CA
- Pockets
- 2 · best druggability 0.43
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endoglucanase B (EC 3.2.1.4) | protein | 302 | 42% helix, 19% strand | P06565 |
Ligands and binding sites
- BGC · beta-D-glucopyranose · sugar · 2 copies · chains A
- CA · Calcium ion · metal · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 133 | 0.43 | 0.76 | 24 | BGC, CA |
| 2 | 120 | 0.39 | 0.75 | 19 | empty |
Compared structures
- 1QI0 · Endoglucanase CEL5A from bacillus agaradhaerens in the tetragonal crystal form in complex… · the same entry in another collection · chain A against A, TM-score 1.00
- P06565 · AlphaFold monomer V2.0 prediction for endoglucanase B (P06565) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06565
- Elsewhere: RCSB PDB 1QI0 · PDBe 1QI0 · UniProt P06565
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