Research workbench
Crystal structure of VP6, the major capsid protein of group a rotavirus
Analyse Crystal structure of VP6, the major capsid protein of group a rotavirus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1QHD
- Type
- protein
- Length
- 397 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Viral capsid VP6
- UniProt
- P04509
- Ligands
- ACE, CA, ZN, CL
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Viral capsid VP6 | protein | 397 | 32% helix, 31% strand | P04509 |
Ligands and binding sites
- ACE · Acetyl group · ligand · chains A
- CA · Calcium ion · metal · 5 copies · chains A
- ZN · Zinc ion · metal · chains A
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 1QHD · Crystal structure of VP6, the major capsid protein of group a rotavirus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P04509
- Elsewhere: RCSB PDB 1QHD · PDBe 1QHD · UniProt P04509
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