Research workbench
Udp-manganese complex of spsa from bacillus subtilis
Analyse Udp-manganese complex of spsa from bacillus subtilis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1QGQ
- Type
- protein
- Length
- 238 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein (spore coat polysaccharide biosynthesis protein spsa)
- UniProt
- P39621
- Ligands
- UDP, MN, MG
- Pockets
- 1 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein (spore coat polysaccharide biosynthesis protein spsa) | protein | 238 | 38% helix, 27% strand | P39621 |
Ligands and binding sites
- UDP · Uridine-5'-diphosphate · ligand · chains A
- MN · Manganese (II) ion · metal · chains A
- MG · Magnesium ion · metal · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 309 | 0.56 | 0.76 | 35 | MN, MG, UDP, GOL |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 1QGQ · Udp-manganese complex of spsa from bacillus subtilis · the same entry in another collection · chain A against A, TM-score 1.00
- P39621 · AlphaFold monomer V2.0 prediction for spore coat polysaccharide biosynthesis protein spsa… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P39621
- Elsewhere: RCSB PDB 1QGQ · PDBe 1QGQ · UniProt P39621
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