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Crystal structure of human lithostathine to 1.3 a resolution

Analyse Crystal structure of human lithostathine to 1.3 a resolution in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1QDD
Type: protein
Length: 144 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lithostathine
UniProt: P05451
Ligands: NDG, GAL, SIA

Structure

x-ray diffraction · 1 distinct chain · 20% helix, 29% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lithostathine	protein	144	20% helix, 29% strand	P05451

Ligands and binding sites

NDG · 2-acetamido-2-deoxy-alpha-D-glucopyranose · sugar · chains A
GAL · beta-D-galactopyranose · sugar · chains A
SIA · N-acetyl-alpha-neuraminic acid · sugar · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 3 disulfide, 1 glycan (disulfide, O-glycosylation).

Compared structures

1QDD · Crystal structure of human lithostathine to 1.3 a resolution · the same entry in another collection · chain A against A, TM-score 1.00
P05451 · AlphaFold monomer V2.0 prediction for lithostathine-1-alpha (P05451) · a predicted model of the same protein · chain A against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P05451
Elsewhere: RCSB PDB 1QDD · PDBe 1QDD · UniProt P05451

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