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Ternary complex of SUMO1 with the sim of pml and zinc

Analyse Ternary complex of SUMO1 with the sim of pml and zinc in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 8DJI
Type: protein
Length: 90 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Small ubiquitin-related modifier 1; Protein pml
EC: 2.3.2.-
UniProt: P63165, P29590
Ligands: ZN

Structure

x-ray diffraction · 2 distinct chains · 20% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Small ubiquitin-related modifier 1	protein	75	24% helix, 33% strand	P63165
B	Protein pml (EC 2.3.2.-)	protein	15	0% helix, 20% strand	P29590

Ligands and binding sites

ZN · Zinc ion · metal · 3 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 765 Å² buried · 16 hydrogen bonds · protein-protein

Compared structures

8DJI · Ternary complex of SUMO1 with the SIM of PML and zinc · the same entry in another collection · chain A against A, TM-score 1.00
P29590 · AlphaFold monomer V2.0 prediction for protein pml (P29590) · a predicted model of the same protein · chain B against A, TM-score 0.32

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P63165
Every structure of UniProt P29590
Elsewhere: RCSB PDB 8DJI · PDBe 8DJI · UniProt P63165 · UniProt P29590

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