Research workbench

Cryo-EM structure of a pyrococcus abyssi 30S bound to met-initiator tRNA, mRNA and AIF1A.

Analyse Cryo-EM structure of a pyrococcus abyssi 30S bound to met-initiator tRNA, mRNA… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7ZAI
Type: protein + RNA
Length: 5,289 residues
Chains: 32
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q9V2K7, Q9V191, G8ZFK7, P61992, Q9V1U8, Q9V1V5, Q9UYS3, Q9V109, Q9V1V0, Q9UZL4, Q9V195, Q9V0V6, P62010, P61994, Q9V1A0, P62012, Q9V2K9, Q9V1U5, Q9V0G0, Q9V1T9, Q9V0G8, Q9UY20, Q9UXZ3, P61029, P61238, Q9V1U1, Q8U232, P62008, Q9V138
Ligands: MET, MG, ZN

Structure

electron microscopy · 32 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
2	—	rna	1497	—	—
A	—	protein	188	—	Q9V2K7
B	—	protein	196	—	Q9V191
C	—	protein	57	—	G8ZFK7
D	—	protein	173	—	P61992
E	—	protein	242	—	Q9V1U8
F	—	protein	229	—	Q9V1V5
G	—	protein	124	—	Q9UYS3
H	—	protein	214	—	Q9V109
I	—	protein	129	—	Q9V1V0
J	—	protein	125	—	Q9UZL4
K	—	protein	135	—	Q9V195
L	—	protein	100	—	Q9V0V6
M	—	protein	127	—	P62010
N	—	protein	146	—	P61994
O	—	protein	141	—	Q9V1A0
P	—	protein	55	—	P62012
Q	—	protein	151	—	Q9V2K9
R	—	protein	107	—	Q9V1U5
S	—	protein	64	—	Q9V0G0
T	—	protein	124	—	Q9V1T9
U	—	protein	149	—	Q9V0G8
V	—	protein	96	—	Q9UY20
W	—	protein	61	—	Q9UXZ3
X	—	protein	65	—	P61029
Y	—	protein	49	—	P61238
Z	—	protein	196	—	Q9V1U1
0	—	protein	36	—	Q8U232
3	—	protein	122	—	P62008
5	—	rna	22	—	—
4	—	rna	77	—	—
6	—	protein	92	—	Q9V138

Ligands and binding sites

MET · Methionine · ligand · chains 4
MG · Magnesium ion · metal · 62 copies · chains 2, U, K, M, F, 5, 4
ZN · Zinc ion · metal · 6 copies · chains C, F, P, R, W

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7ZAI · Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA, mRNA and aIF1A. · the same entry in another collection · chain I against I, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9V2K7
Every structure of UniProt Q9V191
Every structure of UniProt G8ZFK7
Every structure of UniProt P61992
Every structure of UniProt Q9V1U8
Every structure of UniProt Q9V1V5
Every structure of UniProt Q9UYS3
Every structure of UniProt Q9V109
Every structure of UniProt Q9V1V0
Every structure of UniProt Q9UZL4
Every structure of UniProt Q9V195
Every structure of UniProt Q9V0V6
Every structure of UniProt P62010
Every structure of UniProt P61994
Every structure of UniProt Q9V1A0
Every structure of UniProt P62012
Every structure of UniProt Q9V2K9
Every structure of UniProt Q9V1U5
Every structure of UniProt Q9V0G0
Every structure of UniProt Q9V1T9
Every structure of UniProt Q9V0G8
Every structure of UniProt Q9UY20
Every structure of UniProt Q9UXZ3
Every structure of UniProt P61029
Every structure of UniProt P61238
Every structure of UniProt Q9V1U1
Every structure of UniProt Q8U232
Every structure of UniProt P62008
Every structure of UniProt Q9V138
Elsewhere: RCSB PDB 7ZAI · PDBe 7ZAI · UniProt Q9V2K7 · UniProt Q9V191 · UniProt G8ZFK7 · UniProt P61992 · UniProt Q9V1U8 · UniProt Q9V1V5 · UniProt Q9UYS3 · UniProt Q9V109 · UniProt Q9V1V0 · UniProt Q9UZL4 · UniProt Q9V195 · UniProt Q9V0V6 · UniProt P62010 · UniProt P61994 · UniProt Q9V1A0 · UniProt P62012 · UniProt Q9V2K9 · UniProt Q9V1U5 · UniProt Q9V0G0 · UniProt Q9V1T9 · UniProt Q9V0G8 · UniProt Q9UY20 · UniProt Q9UXZ3 · UniProt P61029 · UniProt P61238 · UniProt Q9V1U1 · UniProt Q8U232 · UniProt P62008 · UniProt Q9V138

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