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Crystal structure of TRIM7 bound to GN1

Analyse Crystal structure of TRIM7 bound to GN1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7Y3B
Type: protein
Length: 177 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: E3 ubiquitin-protein ligase TRIM7,TRIM7-GN1
EC: 2.3.2.27
UniProt: Q9C029
Pockets: 1 · best druggability 0.31

Structure

x-ray diffraction · 1 distinct chain · 4% helix, 42% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	E3 ubiquitin-protein ligase TRIM7,TRIM7-GN1 (EC 2.3.2.27)	protein	177	4% helix, 42% strand	Q9C029

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	68	0.31	0.75	16	empty

Compared structures

7Y3B · Crystal structure of TRIM7 bound to GN1 · the same entry in another collection · chain A against A, TM-score 1.00
Q9C029 · AlphaFold monomer V2.0 prediction for E3 ubiquitin-protein ligase TRIM7 (Q9C029) · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9C029
Elsewhere: RCSB PDB 7Y3B · PDBe 7Y3B · UniProt Q9C029

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