Research workbench
Glycosyltransferase
Analyse Glycosyltransferase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7W1B
- Type
- protein
- Length
- 457 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycosyltransferase
- EC
- 2.4.1.-
- UniProt
- A0A385Z7H9
- Ligands
- UDP, DTX
- Pockets
- 3 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycosyltransferase (EC 2.4.1.-) | protein | 457 | 45% helix, 16% strand | A0A385Z7H9 |
Ligands and binding sites
- UDP · Uridine-5'-diphosphate · ligand · chains A
- DTX · Digitoxigenin · ligand · chains A
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 666 | 0.78 | 0.83 | 66 | UDP, TRS, DTX |
| 2 | 149 | 0.44 | 0.76 | 21 | empty |
| 3 | 74 | 0.42 | 0.80 | 19 | empty |
Compared structures
- 7W1B · Glycosyltransferase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A385Z7H9
- Elsewhere: RCSB PDB 7W1B · PDBe 7W1B · UniProt A0A385Z7H9
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