Research workbench
Crystal structure of E.COLI pseudouridine kinase psuk complexed with pseudouridine.
Analyse Crystal structure of E.COLI pseudouridine kinase psuk complexed with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7VSK
- Type
- protein
- Length
- 272 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pfkb domain protein
- UniProt
- A0A140N873
- Ligands
- FJF
- Pockets
- 1 · best druggability 0.28
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pfkb domain protein | protein | 272 | 40% helix, 25% strand | A0A140N873 |
Ligands and binding sites
- FJF · 5-[(2~{S},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]-1~{H}-pyrimidine-2,4-dione · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 63 | 0.28 | 0.73 | 15 | FJF |
Compared structures
- 7VSK · Crystal structure of E.coli pseudouridine kinase PsuK complexed with pseudouridine. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A140N873
- Elsewhere: RCSB PDB 7VSK · PDBe 7VSK · UniProt A0A140N873
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