Research workbench

Structure of nf-kb P50 homodimer bound to a kb site

Analyse Structure of nf-kb P50 homodimer bound to a kb site in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1BFT
Type: protein
Length: 202 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nuclear factor nf-kappa-B P65
UniProt: Q04207

Structure

x-ray diffraction · 1 distinct chain · 9% helix, 47% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Nuclear factor nf-kappa-B P65	protein	101	9% helix, 47% strand	Q04207

Interfaces

1 interface between chains.

A–B · 719 Å² buried · 9 hydrogen bonds · protein-protein

Compared structures

1BFT · Structure of nf-kb P50 homodimer bound to a kb site · the same entry in another collection · chain A against A, TM-score 1.00
Q04207 · AlphaFold monomer V2.0 prediction for transcription factor P65 (Q04207) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q04207
Elsewhere: RCSB PDB 1BFT · PDBe 1BFT · UniProt Q04207

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.