Research workbench
Local refinement of band 3-III cytoplasmic domains, class 1 of erythrocyte ankyrin-1 complex
Analyse Local refinement of band 3-III cytoplasmic domains, class 1 of erythrocyte… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7V0Y
- Type
- protein
- Length
- 558 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Band 3 anion transport protein
- UniProt
- P02730
- Pockets
- 4 · best druggability 0.74
Structure
electron microscopy · 2 distinct chains · 34% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| E | Band 3 anion transport protein | protein | 285 | 34% helix, 27% strand | P02730 |
| C | Band 3 anion transport protein | protein | 273 | 34% helix, 26% strand | P02730 |
Pockets
4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 614 | 0.74 | 0.81 | 54 | empty |
| 2 | 407 | 0.69 | 0.81 | 48 | empty |
| 3 | 210 | 0.66 | 0.84 | 30 | empty |
| 4 | 148 | 0.53 | 0.80 | 28 | empty |
Interfaces
1 interface between chains.
- E–C · 2538 Ų buried · 20 hydrogen bonds · protein-protein
Compared structures
- 7V0Y · Local refinement of Band 3-III cytoplasmic domains, class 1 of erythrocyte ankyrin-1… · the same entry in another collection · chain E against E, TM-score 1.00
- P02730 · AlphaFold monomer V2.0 prediction for band 3 anion transport protein (P02730) · a predicted model of the same protein · chain E against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02730
- Elsewhere: RCSB PDB 7V0Y · PDBe 7V0Y · UniProt P02730
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